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Well if you have reinatalled the operating system it does cut down what would have been a very long list to check.
Slow loading from disc could be caused by: -
1. Anti-Virus Internet Security products like Norton that have an active checking of opening software mode enabled.
2. Hard Drive running in PIO Mode rather than Ultra DMA - check the settings in Device Manager -> IDE ATA/ATAPI Controllers -> Primary IDE Channel -> Advanced Settings
3. Badly Fragmented Hard Disc or Many Bad Sectors. Run CHKDSK and DEFRAG.
4. Windows Indexing Services
Just a few ideas for you to check - perhaps others may have some more suggestions.
Have you tried it after a System Recovery and before you add any software?
Also 'Perceptions' of what is slow can change over time!!!